Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACTGGACAGGGAGCAGCTGTAC
.(((((((((..((((..(((&)))..))))...))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_024690
GeneSymbolMUC16
Binding site39482,39504
Score0.923
Seed1
Au0.426
Energy-21.5
Binding len22
Me-9.965
Phylopstem-0.3299529777777778
Phylopflank-0.58034789875
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure