Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTTGCAACCTGATGACTTTGAAAAGCTGTT
..((((((..(((((((((((&)))))))))))..............)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_025144
GeneSymbolALPK1
Binding site3172,3204
Score1.0
Seed1
Au0.485
Energy-22.4
Binding len32
Me-7.256
Phylopstem1.0313541
Phylopflank1.4459453400000002
Longest consecutive pairings11
Position of longest consecutive pairings21
Pairings in 3prime end8
PositionCDS
2D Structure