Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTTGTTCAGCTACAACTGCTGCCACAAGGGCCCCTGGTGCAGT
(((((((.(((((((((((((&))))........))))))))).))...............))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_025259
GeneSymbolMSH5
Binding site2256,2301
Score0.846
Seed1
Au0.441
Energy-18.6
Binding len45
Me-6.251
Phylopstem2.341942114285714
Phylopflank3.632276966249999
Longest consecutive pairings9
Position of longest consecutive pairings24
Pairings in 3prime end8
PositionCDS
2D Structure