Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ATCTGCAATACAGAACAACCAGGCTGCAGA
((((((((..((((((...((&.))...)))))).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_030772
GeneSymbolGJA9
Binding site407,437
Score0.846
Seed1
Au0.529
Energy-20.8
Binding len22
Me-6.236
Phylopstem0.1732520375
Phylopflank0.11896076875000001
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure