Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCGCCGCGGCCGCTGCTTCTTTCACACTTTAGTTGGGAGCTGCGC
.(((((((((((((((..(((&)))...))))))))........................))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_030806
GeneSymbolC1orf21
Binding site59,105
Score0.923
Seed1
Au0.368
Energy-23.4
Binding len46
Me-3.793
Phylopstem0.9864590512820516
Phylopflank0.9997852675000001
Longest consecutive pairings8
Position of longest consecutive pairings32
Pairings in 3prime end6
Position5UTR
2D Structure