Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCTTGTGGGGAGGTGTGGATGGAGAGGCGCAGGCTGGAACCGGGGCTGCAC
.(((((((.(((((....(((&.)))..))))).))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001142857
GeneSymbolCLXN
Binding site770,821
Score1.0
Seed1
Au0.353
Energy-23.4
Binding len20
Me-5.818
Phylopstem-0.3891458857142857
Phylopflank0.05433544249999997
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure