Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&TTGCTTAGTGTGCCAGT
..(((((((((...((((....&))))...))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001143682
GeneSymbolCALCOCO1
Binding site4850,4867
Score0.923
Seed1
Au0.529
Energy-17.5
Binding len17
Me-10.45
Phylopstem2.4678548888888887
Phylopflank2.6035842000000002
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure