Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGATGCAGCTGAAGCTACAGCTGGAGG
((.((((((((((((((((((&))))..))))))))......)))))).)).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001143682
GeneSymbolCALCOCO1
Binding site458,488
Score0.846
Seed0
Au0.426
Energy-21.1
Binding len30
Me-5.495
Phylopstem-0.40189445384615385
Phylopflank0.03761073749999996
Longest consecutive pairings8
Position of longest consecutive pairings16
Pairings in 3prime end8
PositionCDS
2D Structure