Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTTGAAGAAAAGGGAAAACTTGCTGCGGTTGCT
..(((((((((((..((((((&)))))).................))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001144013
GeneSymbolRGPD3
Binding site5352,5387
Score0.846
Seed1
Au0.529
Energy-21.7
Binding len35
Me-6.549
Phylopstem4.015791690909091
Phylopflank2.9328942300000005
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure