Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CAACCGCCTGAAACAGCAGTTGCT
..((((((((.(((...((((&.))))..))).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001144986
GeneSymbolCCDC169
Binding site136,160
Score0.846
Seed1
Au0.456
Energy-21.8
Binding len20
Me-8.75
Phylopstem-0.189459675
Phylopflank-0.004952218750000022
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end5
Position5UTR
2D Structure