Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCAAGTAAAGAGAGCAGAATGAATGGACAATTGCAGCTGCC
..((((((((((((((.....&.)))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001145073
GeneSymbolUSP27X
Binding site1841,1885
Score1.0
Seed1
Au0.618
Energy-24.4
Binding len16
Me-4.957
Phylopstem5.163505864285715
Phylopflank4.8563823912499995
Longest consecutive pairings14
Position of longest consecutive pairings1
Pairings in 3prime end3
PositionCDS
2D Structure