Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GGGTCTCAGAGACCTGCATTGTGCCTGCCTGGC
.((.((((((((((((((.(((&.))).))))))))))..)))).)).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001172700
GeneSymbolSHROOM1
Binding site1665,1698
Score0.846
Seed0
Au0.441
Energy-20.5
Binding len25
Me-6.825
Phylopstem0.21206146875000004
Phylopflank0.28584411750000005
Longest consecutive pairings10
Position of longest consecutive pairings10
Pairings in 3prime end7
PositionCDS
2D Structure