Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&AAGTTCACAGAAACAGAAAGGAGAATAGTGGTTGCCAGGG
.(((((((..((.(((......&.))).))..))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001190241
GeneSymbolIFT80
Binding site3386,3426
Score0.846
Seed1
Au0.456
Energy-17.9
Binding len17
Me-7.381
Phylopstem5.646564142857143
Phylopflank4.8563574775
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end2
Position3UTR
2D Structure