Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&CTACTTTCATTTTCCCTTGGGGACTACAGGTGCCAGGTA
(((((((((....(((((.(((&.)))))))).))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_006260
GeneSymbolDNAJC3
Binding site4042,4081
Score0.846
Seed1
Au0.676
Energy-18.6
Binding len20
Me-12.641
Phylopstem0.002490666666666641
Phylopflank-0.40731826375
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure