Details of Duplex


2D Structure dot-bracket from RNAduplex"
TGTAAACATCCCCGACTGGAAG&CTAGATTGAAATATTTTTAATTCCCGAGAGGGATGTTTGGCAT
(((((((((((((..(.((((.&.)))).).).)))))))))).)).
Details
MiRNAhsa-miR-30d-5p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site1955,1998
Score0.923
Seed1
Au0.632
Energy-18.7
Binding len24
Me-5.53
Phylopstem3.06214232
Phylopflank3.78949075375
Longest consecutive pairings10
Position of longest consecutive pairings4
Pairings in 3prime end5
Position3UTR
2D Structure