Details of Duplex


2D Structure dot-bracket from RNAduplex"
GCTCTGACTTTATTGCACTACT&GGATCTGGAGATGGGCCGATAAAGTCAGTACGCA
((.((((((((((((..(((((&.)).)))..))))))))))))...)).
Details
MiRNAhsa-miR-301a-5p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site1897,1931
Score0.91
Seed0
Au0.544
Energy-20.2
Binding len27
Me-5.728
Phylopstem2.911887475
Phylopflank4.26091564
Longest consecutive pairings12
Position of longest consecutive pairings6
Pairings in 3prime end6
PositionCDS
2D Structure