Details of Duplex


2D Structure dot-bracket from RNAduplex"
TCTCACACAGAAATCGCACCCGT&ATGGGAGGCACCTCAGATTCTTAATCCAGCATGTCGGATTGGGTGTGGTGAGT
.(((((........((((((((.&.))))))))))))).
Details
MiRNAhsa-miR-342-3p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site1140,1193
Score0.846
Seed0
Au0.559
Energy-17.0
Binding len15
Me-18.267
Phylopstem2.00028525
Phylopflank3.66974891875
Longest consecutive pairings13
Position of longest consecutive pairings1
Pairings in 3prime end7
PositionCDS
2D Structure