Details of Duplex


2D Structure dot-bracket from RNAduplex"
CAAAAACCACAGTTTCTTTTGC&CAAAGGAAGCCTCCTAGAGGATGTGGTTC
....(((((((((((((((((.&))))))))))...........))))))).
Details
MiRNAhsa-miR-548d-3p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site867,896
Score0.846
Seed0
Au0.574
Energy-16.8
Binding len29
Me-9.547
Phylopstem4.80422425
Phylopflank4.740928084999999
Longest consecutive pairings10
Position of longest consecutive pairings19
Pairings in 3prime end7
PositionCDS
2D Structure