Details of Duplex


2D Structure dot-bracket from RNAduplex"
TGACAACTATGGATGAGCTCT&AGTTTCTGTATGGTTGTTT
.((((((((((.(.(((((..&))))).).)))))))))).
Details
MiRNAhsa-miR-549a-3p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site2389,2408
Score0.846
Seed1
Au0.706
Energy-14.7
Binding len19
Me-7.997
Phylopstem4.0847186
Phylopflank3.44864857375
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end5
Position3UTR
2D Structure