Details of Duplex


2D Structure dot-bracket from RNAduplex"
AAAGGATTCTGCTGTCGGTCCCACT&AGTTAATGGCAGCTGCTGAAGGGCACCCATGGCTTTGGTTGATTTATCTTGTGACAGCAGGAGTGCCA
...((.((((((((((((((((...&.))).))).........................))))))))))...)).
Details
MiRNAhsa-miR-541-5p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site1502,1570
Score0.923
Seed0
Au0.603
Energy-23.2
Binding len49
Me-8.415
Phylopstem3.4867796190476192
Phylopflank3.579251965
Longest consecutive pairings10
Position of longest consecutive pairings6
Pairings in 3prime end5
PositionCDS
2D Structure