Details of Duplex


2D Structure dot-bracket from RNAduplex"
CTGACTGTTGCCGTCCTCCAG&TGGAGAATGGGAGGCACCTCAGATTCTTAATCCAGCATGTCGGA
((((((((((((((.(((((.&))))).))))......................))))).))))).
Details
MiRNAhsa-miR-943
RefseqIDNM_004362
GeneSymbolCLGN
Binding site1134,1178
Score0.846
Seed1
Au0.485
Energy-20.0
Binding len44
Me-4.673
Phylopstem2.638314270270269
Phylopflank4.55468336875
Longest consecutive pairings5
Position of longest consecutive pairings39
Pairings in 3prime end6
PositionCDS
2D Structure