Details of Duplex


2D Structure dot-bracket from RNAduplex"
GAGGGTCTTGGGAGGGATGTGAC&TCCTATCAAACCTCCCAAAGAAATTGAAGATCCCA
(.(((((((((((((((((.((.&)).))))...)))))))..........))))))).
Details
MiRNAhsa-miR-1182
RefseqIDNM_004362
GeneSymbolCLGN
Binding site897,932
Score0.846
Seed1
Au0.618
Energy-20.9
Binding len35
Me-5.101
Phylopstem4.761974746666667
Phylopflank4.541745065
Longest consecutive pairings7
Position of longest consecutive pairings18
Pairings in 3prime end6
PositionCDS
2D Structure