Details of Duplex


2D Structure dot-bracket from RNAduplex"
CACTGTAGGTGATGGTGAGAGTGGGCA&TGTATATGACCCACATTTACCTAGTTTGTGTCAAATTATAGTTACAGTGA
((((((((.((..((((((.(((((((&.)).))))).)))))).................)).)))))))).
Details
MiRNAhsa-miR-1183
RefseqIDNM_004362
GeneSymbolCLGN
Binding site2432,2482
Score0.846
Seed1
Au0.721
Energy-25.2
Binding len45
Me-9.63
Phylopstem3.861947
Phylopflank3.7742172399999996
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure