Details of Duplex


2D Structure dot-bracket from RNAduplex"
GTGAGGGCATGCAGGCCTGGATGGGG&TGCCGAAAACAGGCCGCAAGAGAGATAATCAATATGCATTTCCAAGCCTTTT
..(((((((((((((((((..(((.(&).)))....))))))...................)))))......)))))).
Details
MiRNAhsa-miR-1226-5p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site88,140
Score0.923
Seed1
Au0.588
Energy-21.2
Binding len52
Me-4.957
Phylopstem0.5318948666666665
Phylopflank1.06324674125
Longest consecutive pairings6
Position of longest consecutive pairings37
Pairings in 3prime end5
Position5UTR
2D Structure