Details of Duplex


2D Structure dot-bracket from RNAduplex"
AAAAACCACAATTACTTTTGCACCA&GGTGTGGTGAGTGGA
.....((((..(((((...(((((.&)))))))))))))).
Details
MiRNAhsa-miR-548t-3p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site1181,1196
Score0.923
Seed0
Au0.559
Energy-15.5
Binding len15
Me-17.733
Phylopstem2.196206
Phylopflank3.6794094275000004
Longest consecutive pairings14
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure