Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTAGGGAGTAGAAGGGTGGGGAG&CAAAAATTCCTGATCCTTCTGCCGTCA
...((..((((((((((.(((((&.))))).))))))))))..)).
Details
MiRNAhsa-miR-3162-5p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site965,992
Score1.0
Seed0
Au0.544
Energy-24.1
Binding len22
Me-9.959
Phylopstem4.4275917
Phylopflank5.0096173875000005
Longest consecutive pairings10
Position of longest consecutive pairings5
Pairings in 3prime end7
PositionCDS
2D Structure