Details of Duplex


2D Structure dot-bracket from RNAduplex"
CAGGCGTCTGTCTACGTGGCTT&AGGCCGCAAGAGAGATAATCAATATGCATTTCCAAGCCTT
.((((((((.(((..(((((((&))))))).))).))))...................)))).
Details
MiRNAhsa-miR-3186-5p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site98,138
Score0.923
Seed1
Au0.574
Energy-19.6
Binding len40
Me-6.628
Phylopstem0.431338
Phylopflank0.9563747637500001
Longest consecutive pairings7
Position of longest consecutive pairings33
Pairings in 3prime end7
Position5UTR
2D Structure