Details of Duplex


2D Structure dot-bracket from RNAduplex"
AGGGCATAGGAGAGGGTTGATAT&TTATCCCTGATCCTAATGCTG
..(((((((((.((((.(((...&))).))))..))))).)))).
Details
MiRNAhsa-miR-3945
RefseqIDNM_004362
GeneSymbolCLGN
Binding site1082,1103
Score0.846
Seed1
Au0.618
Energy-17.9
Binding len21
Me-8.304
Phylopstem5.2624930999999995
Phylopflank4.009234595
Longest consecutive pairings5
Position of longest consecutive pairings6
Pairings in 3prime end4
PositionCDS
2D Structure