Details of Duplex


2D Structure dot-bracket from RNAduplex"
AATGTGGAAGTGGTCTGAGGCAT&TGCCGAAAACAGGCCGCAAGAGAGATAATCAATATGCATTTCCAA
....(((((((((((((.((((.&)))).....))))))))......................))))).
Details
MiRNAhsa-miR-4657
RefseqIDNM_004362
GeneSymbolCLGN
Binding site88,133
Score0.846
Seed0
Au0.588
Energy-18.5
Binding len45
Me-9.547
Phylopstem0.3443636114285714
Phylopflank0.98709350375
Longest consecutive pairings8
Position of longest consecutive pairings28
Pairings in 3prime end6
Position5UTR
2D Structure