Details of Duplex


2D Structure dot-bracket from RNAduplex"
CAGTTCAGAAGTGTTCCTGAGT&ACTGGTCTGAAGAGACGCGGGGACCAAGTGGCAACGACTTGGACATCTGAGCTGT
(((((((((.(((((((((.((&.)).)))))))..................)).))))))))).
Details
MiRNAhsa-miR-5000-5p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site30,85
Score0.846
Seed1
Au0.426
Energy-21.8
Binding len42
Me-5.18
Phylopstem0.48494238518518523
Phylopflank0.39487385041666667
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end7
Position5UTR
2D Structure