Details of Duplex


2D Structure dot-bracket from RNAduplex"
AGGGCTGGACTCAGCGGCGGAGCT&GGCAGCTGCTGAAGGGCACCCA
.(((.((..(((((((((...(((&))).)))))))).)..))))).
Details
MiRNAhsa-miR-5001-5p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site1509,1531
Score1.0
Seed0
Au0.559
Energy-23.3
Binding len22
Me-11.282
Phylopstem3.4564072
Phylopflank3.0369295725
Longest consecutive pairings8
Position of longest consecutive pairings10
Pairings in 3prime end5
PositionCDS
2D Structure