Details of Duplex


2D Structure dot-bracket from RNAduplex"
CAGGGCTCAGGGATTGGATGGAGG&CCTCCACTGGTCGATAATCCTAACTATCAGGGAATCTGGAGTCCTC
.((((((((((((((((.((((((&))))))))))))......................)))).)))))).
Details
MiRNAhsa-miR-5088-5p
RefseqIDNM_004362
GeneSymbolCLGN
Binding site1240,1286
Score0.923
Seed1
Au0.618
Energy-23.2
Binding len46
Me-3.793
Phylopstem3.6662145128205132
Phylopflank4.356742813750001
Longest consecutive pairings12
Position of longest consecutive pairings34
Pairings in 3prime end7
PositionCDS
2D Structure