Details of Duplex


2D Structure dot-bracket from RNAduplex"
AATCGGACCCATTTAAACCGGAG&GGTTGGCTGGATGGGTCTT
....(((((((((((((((....&))))...))))))))))).
Details
MiRNAhsa-miR-5188
RefseqIDNM_004362
GeneSymbolCLGN
Binding site329,348
Score1.0
Seed0
Au0.603
Energy-19.2
Binding len19
Me-9.547
Phylopstem3.4642099444444447
Phylopflank2.0912231899999996
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end4
PositionCDS
2D Structure