Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTCAGATCCCAGCGGTGCCTCT&GGAGGCACCTCAGATTCTTAATCCAGCATGTCGGATTGGGTGTGGT
.(((.(.(((((.(((((((((&))))))))).).........................))))).))).
Details
MiRNAhsa-miR-5100
RefseqIDNM_004362
GeneSymbolCLGN
Binding site1143,1189
Score0.827
Seed0
Au0.515
Energy-21.4
Binding len46
Me-10.745
Phylopstem2.458660666666667
Phylopflank3.82514641875
Longest consecutive pairings9
Position of longest consecutive pairings37
Pairings in 3prime end8
PositionCDS
2D Structure