Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&CTGCTGTTGGGGCCAGGG
.((((((...((((((((....&)))).))))..)))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDXM_017029718
GeneSymbolRPS6KA3
Binding site5642,5660
Score0.923
Seed1
Au0.456
Energy-19.5
Binding len18
Me-8.406
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings6
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure