Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&ATGTACATGTGTAAACATGCCATAGCATGTGTGGTAGGTG
(((((.(((((.((((......&.))))))))).))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001077445
GeneSymbolJADE3
Binding site4099,4139
Score0.846
Seed0
Au0.632
Energy-17.3
Binding len17
Me-9.185
Phylopstem1.1030522
Phylopflank1.3245625824999998
Longest consecutive pairings9
Position of longest consecutive pairings7
Pairings in 3prime end2
Position3UTR
2D Structure