Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GAGTGCATCTCTGATGTTTACTACATCTCCCATGCCAGGC
.((((((((...((((((....&.)))))).....)))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001122965
GeneSymbolRPTN
Binding site3279,3319
Score1.0
Seed1
Au0.515
Energy-19.4
Binding len21
Me-11.207
Phylopstem1.9257029
Phylopflank1.37371001125
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure