Details of Duplex


2D Structure dot-bracket from RNAduplex"
CACTGGCTCCTTTCTGGGTAGA&TCTCCTGCATGCTCTGAGAGAGTCTGCGCCTGAGCCAGTT
.(((((((((((((.(((((..&.))))).)))))...........)))))))).
Details
MiRNAhsa-miR-892b
RefseqIDNM_001127211
GeneSymbolSHTN1
Binding site5542,5582
Score0.846
Seed1
Au0.544
Energy-22.0
Binding len32
Me-4.529
Phylopstem2.9975389083333326
Phylopflank2.98731496375
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end5
Position3UTR
2D Structure