Details of Duplex


2D Structure dot-bracket from RNAduplex"
TCCAGCATCAGTGATTTTGTTG&AAAAACCTGATGACTGGAA
(((((((((((.(.((((....&)))).))))))).))))).
Details
MiRNAhsa-miR-338-3p
RefseqIDNM_001130675
GeneSymbolCLGN
Binding site1187,1206
Score0.846
Seed1
Au0.529
Energy-16.7
Binding len19
Me-8.141
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings7
Position of longest consecutive pairings7
Pairings in 3prime end4
PositionCDS
2D Structure