Details of Duplex


2D Structure dot-bracket from RNAduplex"
AAAGTGCTTCCTTTTTGAGGG&CCAAGCAACAAAGAGGAGGTGTTTG
.((((((((((((((((..(.&.)..)))))))))))))))).
Details
MiRNAhsa-miR-520e-3p
RefseqIDNM_001130675
GeneSymbolCLGN
Binding site119,144
Score0.846
Seed1
Au0.544
Energy-16.6
Binding len21
Me-3.793
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings16
Position of longest consecutive pairings1
Pairings in 3prime end5
Position5UTR
2D Structure