Details of Duplex


2D Structure dot-bracket from RNAduplex"
TCGGGGATCATCATGTCACGAGA&CTGGCTGGCTTGATGATGAACCAAAATTTATCCCTGAT
(((((((((((((.(((((.((.&)).).)))).))))))..............))))))).
Details
MiRNAhsa-miR-542-5p
RefseqIDNM_001130675
GeneSymbolCLGN
Binding site1139,1177
Score0.923
Seed1
Au0.574
Energy-23.0
Binding len38
Me-4.794
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure