Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTCAGATCCCAGCGGTGCCTCT&GGAGGCACCTCAGATTCTTAATCCAGCATGTCGGATTGGGTGTGGT
.(((.(.(((((.(((((((((&))))))))).).........................))))).))).
Details
MiRNAhsa-miR-5100
RefseqIDNM_001130675
GeneSymbolCLGN
Binding site1227,1273
Score0.923
Seed0
Au0.515
Energy-21.4
Binding len46
Me-10.745
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings9
Position of longest consecutive pairings37
Pairings in 3prime end8
PositionCDS
2D Structure