Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GGTCAAGCCTGGGAATGCCAGGG
.((((((((.............&.)))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_032595
GeneSymbolPPP1R9B
Binding site3438,3461
Score0.846
Seed1
Au0.368
Energy-15.4
Binding len10
Me-14.322
Phylopstem2.546582875
Phylopflank3.876701205
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end0
Position3UTR
2D Structure