Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&AGAACTAGTTTATTGTTAGCCAGGTT
(((((((..((((((.......&.))))))..))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_033116
GeneSymbolNEK9
Binding site5420,5446
Score0.923
Seed1
Au0.588
Energy-17.6
Binding len17
Me-7.541
Phylopstem2.266339285714286
Phylopflank2.43537529625
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end1
Position3UTR
2D Structure