Details of Duplex


2D Structure dot-bracket from RNAduplex"
CACTGGCTCCTTTCTGGGTAGA&TGCCGGGGAGGGAAGCCC
....(((((((((((.((((..&)))).)))))))).))).
Details
MiRNAhsa-miR-892b
RefseqIDNM_053044
GeneSymbolHTRA3
Binding site1773,1791
Score0.846
Seed0
Au0.441
Energy-23.5
Binding len18
Me-9.78
Phylopstem-0.38567737499999993
Phylopflank-0.3959540374999999
Longest consecutive pairings8
Position of longest consecutive pairings5
Pairings in 3prime end5
Position3UTR
2D Structure