Details of Duplex


2D Structure dot-bracket from RNAduplex"
CACTGGCTCCTTTCTGGGTAGA&TCTGCATGAACCACGCCTGGTGAAGGAGCCTGGGTGA
(((((((((((((((((((...&.)))))).)))))))))..)))).
Details
MiRNAhsa-miR-892b
RefseqIDNM_078485
GeneSymbolCOL9A1
Binding site2204,2241
Score0.904
Seed1
Au0.456
Energy-26.6
Binding len24
Me-3.938
Phylopstem4.230187077272728
Phylopflank4.04065914625
Longest consecutive pairings9
Position of longest consecutive pairings7
Pairings in 3prime end5
Position3UTR
2D Structure