Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GGATTCAATGGGCCCCCAGGACCCATTGGCCTACAGGGTTTGCCAGGC
.(((((((.((..(((((....&.)))))..)).))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_080681
GeneSymbolCOL11A2
Binding site3407,3455
Score0.846
Seed1
Au0.353
Energy-23.4
Binding len19
Me-9.486
Phylopstem3.526987828571429
Phylopflank4.12082022375
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end4
PositionCDS
2D Structure