Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GGTCTACGTGTCGGAGCAGGACGGATCCGTCCTGAGCGTGCCGGGA
.((((((((((.(((((((((.&)))))))))))..........................)))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_130444
GeneSymbolCOL18A1
Binding site3389,3435
Score0.846
Seed1
Au0.294
Energy-19.9
Binding len46
Me-7.14
Phylopstem-0.18328102222222215
Phylopflank0.19671246375
Longest consecutive pairings11
Position of longest consecutive pairings35
Pairings in 3prime end7
PositionCDS
2D Structure