Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&AAGTAGAAGGCTTATTAGGCTATGATGGATGCCAGGTT
((((((((..((.(((((....&.))))).))..)))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_138333
GeneSymbolPABIR1
Binding site4989,5027
Score1.0
Seed1
Au0.5
Energy-20.1
Binding len20
Me-7.526
Phylopstem-0.30741996250000003
Phylopflank0.13627703124999999
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure